Publications

Scangos KW, Sugrue LP. From Sweet Spots to Causal Circuits: Navigating Deep Brain Stimulation Targeting Through Anatomic, Connectomic, and Personalized Approaches. Biol Psychiatry. 2024 Jul 15; 96(2):82-84.

Lew CO, Calabrese E, Chen JV, Tang F, Chaudhari G, Lee A, Faro J, Juul S, Mathur A, McKinstry RC, Wisnowski JL, Rauschecker A, Wu YW, Li Y. Artificial Intelligence Outcome Prediction in Neonates with Encephalopathy (AI-OPiNE). Radiol Artif Intell. 2024 Jul 10; e240076.

Fields BKK, Calabrese E, Mongan J, Cha S, Hess CP, Sugrue LP, Chang SM, Luks TL, Villanueva-Meyer JE, Rauschecker AM, Rudie JD. The University of California San Francisco Adult Longitudinal Post-Treatment Diffuse Glioma (UCSF-ALPTDG) MRI Dataset. Radiol Artif Intell. 2024 Jun 12; e230182.

Zhou X, Balachandra AR, Romano MF, Chin SP, Au R, Kolachalama VB. Adversarial Learning for MRI Reconstruction and Classification of Cognitively Impaired Individuals. IEEE Access. 2024; 12:83169-83182.

LaBella D, Khanna O, McBurney-Lin S, Mclean R, Nedelec P, Rashid AS, Tahon NH, Altes T, Baid U, Bhalerao R, Dhemesh Y, Floyd S, Godfrey D, Hilal F, Janas A, Kazerooni A, Kent C, Kirkpatrick J, Kofler F, Leu K, Maleki N, Menze B, Pajot M, Reitman ZJ, Rudie JD, Saluja R, Velichko Y, Wang C, Warman PI, Sollmann N, Diffley D, Nandolia KK, Warren DI, Hussain A, Fehringer JP, Bronstein Y, Deptula L, Stein EG, Taherzadeh M, Portela de Oliveira E, Haughey A, Kontzialis M, Saba L, Turner B, Brüßeler MMT, Ansari S, Gkampenis A, Weiss DM, Mansour A, Shawali IH, Yordanov N, Stein JM, Hourani R, Moshebah MY, Abouelatta AM, Rizvi T, Willms K, Martin DC, Okar A, D'Anna G, Taha A, Sharifi Y, Faghani S, Kite D, Pinho M, Haider MA, Alonso-Basanta M, Villanueva-Meyer J, Rauschecker AM, Nada A, Aboian M, Flanders A, Bakas S, Calabrese E. A multi-institutional meningioma MRI dataset for automated multi-sequence image segmentation. Sci Data. 2024 May 15; 11(1):496.

Roy E, Van Rinsveld A, Nedelec P, Richie-Halford A, Rauschecker AM, Sugrue LP, Rokem A, McCandliss BD, Yeatman JD. Differences in educational opportunity predict white matter development. Dev Cogn Neurosci. 2024 Jun; 67:101386.

Starkweather CK, Sugrue LP, Cajigas I, Speidel B, Krystal AD, Scangos K, Chang EF. Stereoelectroencephalography Electrode Implantation for Inpatient Workup of Treatment-Resistant Depression. Neurosurgery. 2024 Oct 01; 95(4):941-948.

Hosseini SA, Shiri I, Ghaffarian P, Hajianfar G, Avval AH, Seyfi M, Servaes S, Rosa-Neto P, Zaidi H, Ay MR. The effect of harmonization on the variability of PET radiomic features extracted using various segmentation methods. Ann Nucl Med. 2024 Jul; 38(7):493-507.

Broce IJ, Sirkis DW, Nillo RM, Bonham LW, Lee SE, Miller BL, Castruita PA, Sturm VE, Sugrue LS, Desikan RS, Yokoyama JS. C9orf72 gene networks in the human brain correlate with cortical thickness in C9-FTD and implicate vulnerable cell types. Front Neurosci. 2024; 18:1258996.

Chen JV, Li Y, Tang F, Chaudhari G, Lew C, Lee A, Rauschecker AM, Haskell-Mendoza AP, Wu YW, Calabrese E. Automated neonatal nnU-Net brain MRI extractor trained on a large multi-institutional dataset. Sci Rep. 2024 02 26; 14(1):4583.

Rudie JD, Saluja R, Weiss DA, Nedelec P, Calabrese E, Colby JB, Laguna B, Mongan J, Braunstein S, Hess CP, Rauschecker AM, Sugrue LP, Villanueva-Meyer JE. The University of California San Francisco, Brain Metastases Stereotactic Radiosurgery (UCSF-BMSR) MRI Dataset. Radiol Artif Intell. 2024 Feb 21; e230126.

Shiri I, Salimi Y, Sirjani N, Razeghi B, Bagherieh S, Pakbin M, Mansouri Z, Hajianfar G, Avval AH, Askari D, Ghasemian M, Sandoughdaran S, Sohrabi A, Sadati E, Livani S, Iranpour P, Kolahi S, Khosravi B, Bijari S, Sayfollahi S, Atashzar MR, Hasanian M, Shahhamzeh A, Teimouri A, Goharpey N, Shirzad-Aski H, Karimi J, Radmard AR, Rezaei-Kalantari K, Oghli MG, Oveisi M, Vafaei Sadr A, Voloshynovskiy S, Zaidi H. Differential privacy preserved federated learning for prognostic modeling in COVID-19 patients using large multi-institutional chest CT dataset. Med Phys. 2024 Jul; 51(7):4736-4747.

Basich-Pease G, Slepneva N, Frank AC, Norbu T, Morrison MA, Sugrue LP, Larson PS, Starr PA, Lee AM. Tractography-based DBS lead repositioning improves outcome in refractory OCD and depression. Front Hum Neurosci. 2023; 17:1339340.

Parekh P, Fan CC, Frei O, Palmer CE, Smith DM, Makowski C, Iversen JR, Pecheva D, Holland D, Loughnan R, Nedelec P, Thompson WK, Hagler DJ, Andreassen OA, Jernigan TL, Nichols TE, Dale AM. FEMA: Fast and efficient mixed-effects algorithm for large sample whole-brain imaging data. Hum Brain Mapp. 2024 Feb 01; 45(2):e26579.

Roy E, Richie-Halford A, Kruper J, Narayan M, Bloom D, Nedelec P, Rauschecker AM, Sugrue LP, Brown TT, Jernigan TL, McCandliss BD, Rokem A, Yeatman JD. White matter and literacy: A dynamic system in flux. Dev Cogn Neurosci. 2024 Jan 06; 65:101341.

Mattay RR, Kim K, Shah L, Shah B, Sugrue L, Safoora F, Ozhinsky E, Narsinh KH. MR Thermometry during Transcranial MR Imaging-Guided Focused Ultrasound Procedures: A Review. AJNR Am J Neuroradiol. 2023 12 29; 45(1):1-8.

Romano MF, Shih LC, Paschalidis IC, Au R, Kolachalama VB. Large Language Models in Neurology Research and Future Practice. Neurology. 2023 Dec 04; 101(23):1058-1067.

Sabouri M, Rajabi AB, Hajianfar G, Gharibi O, Mohebi M, Avval AH, Naderi N, Shiri I. Machine learning based readmission and mortality prediction in heart failure patients. Sci Rep. 2023 10 31; 13(1):18671.

Tsui B, Calabrese E, Zaharchuk G, Rauschecker AM. Reducing Gadolinium Contrast With Artificial Intelligence. J Magn Reson Imaging. 2023 Oct 31.

Wahlig SG, Nedelec P, Weiss DA, Rudie JD, Sugrue LP, Rauschecker AM. 3D U-Net for automated detection of multiple sclerosis lesions: utility of transfer learning from other pathologies. Front Neurosci. 2023; 17:1188336.