BRAIN Lab Publications
Lew CO, Calabrese E, Chen JV, Tang F, Chaudhari G, Lee A, Faro J, Juul S, Mathur A, McKinstry RC, Wisnowski JL, Rauschecker A, Wu YW, Li Y. Artificial Intelligence Outcome Prediction in Neonates with Encephalopathy (AI-OPiNE). Radiol Artif Intell. 2024 Jul 10; e240076.
Fields BKK, Calabrese E, Mongan J, Cha S, Hess CP, Sugrue LP, Chang SM, Luks TL, Villanueva-Meyer JE, Rauschecker AM, Rudie JD. The University of California San Francisco Adult Longitudinal Post-Treatment Diffuse Glioma (UCSF-ALPTDG) MRI Dataset. Radiol Artif Intell. 2024 Jun 12; e230182.
LaBella D, Khanna O, McBurney-Lin S, Mclean R, Nedelec P, Rashid AS, Tahon NH, Altes T, Baid U, Bhalerao R, Dhemesh Y, Floyd S, Godfrey D, Hilal F, Janas A, Kazerooni A, Kent C, Kirkpatrick J, Kofler F, Leu K, Maleki N, Menze B, Pajot M, Reitman ZJ, Rudie JD, Saluja R, Velichko Y, Wang C, Warman PI, Sollmann N, Diffley D, Nandolia KK, Warren DI, Hussain A, Fehringer JP, Bronstein Y, Deptula L, Stein EG, Taherzadeh M, Portela de Oliveira E, Haughey A, Kontzialis M, Saba L, Turner B, Brüßeler MMT, Ansari S, Gkampenis A, Weiss DM, Mansour A, Shawali IH, Yordanov N, Stein JM, Hourani R, Moshebah MY, Abouelatta AM, Rizvi T, Willms K, Martin DC, Okar A, D'Anna G, Taha A, Sharifi Y, Faghani S, Kite D, Pinho M, Haider MA, Alonso-Basanta M, Villanueva-Meyer J, Rauschecker AM, Nada A, Aboian M, Flanders A, Bakas S, Calabrese E. A multi-institutional meningioma MRI dataset for automated multi-sequence image segmentation. Sci Data. 2024 May 15; 11(1):496.
Roy E, Van Rinsveld A, Nedelec P, Richie-Halford A, Rauschecker AM, Sugrue LP, Rokem A, McCandliss BD, Yeatman JD. Differences in educational opportunity predict white matter development. Dev Cogn Neurosci. 2024 Jun; 67:101386.
Chen JV, Li Y, Tang F, Chaudhari G, Lew C, Lee A, Rauschecker AM, Haskell-Mendoza AP, Wu YW, Calabrese E. Automated neonatal nnU-Net brain MRI extractor trained on a large multi-institutional dataset. Sci Rep. 2024 02 26; 14(1):4583.
Rudie JD, Saluja R, Weiss DA, Nedelec P, Calabrese E, Colby JB, Laguna B, Mongan J, Braunstein S, Hess CP, Rauschecker AM, Sugrue LP, Villanueva-Meyer JE. The University of California San Francisco, Brain Metastases Stereotactic Radiosurgery (UCSF-BMSR) MRI Dataset. Radiol Artif Intell. 2024 Feb 21; e230126.
Parekh P, Fan CC, Frei O, Palmer CE, Smith DM, Makowski C, Iversen JR, Pecheva D, Holland D, Loughnan R, Nedelec P, Thompson WK, Hagler DJ, Andreassen OA, Jernigan TL, Nichols TE, Dale AM. FEMA: Fast and efficient mixed-effects algorithm for large sample whole-brain imaging data. Hum Brain Mapp. 2024 Feb 01; 45(2):e26579.
Roy E, Richie-Halford A, Kruper J, Narayan M, Bloom D, Nedelec P, Rauschecker AM, Sugrue LP, Brown TT, Jernigan TL, McCandliss BD, Rokem A, Yeatman JD. White matter and literacy: A dynamic system in flux. Dev Cogn Neurosci. 2024 Jan 06; 65:101341.
Tsui B, Calabrese E, Zaharchuk G, Rauschecker AM. Reducing Gadolinium Contrast With Artificial Intelligence. J Magn Reson Imaging. 2023 Oct 31.
Wahlig SG, Nedelec P, Weiss DA, Rudie JD, Sugrue LP, Rauschecker AM. 3D U-Net for automated detection of multiple sclerosis lesions: utility of transfer learning from other pathologies. Front Neurosci. 2023; 17:1188336.
Ma SX, Dhanaliwala AH, Rudie JD, Rauschecker AM, Roberts-Wolfe D, Haddawy P, Kahn CE. Bayesian Networks in Radiology. Radiol Artif Intell. 2023 Nov; 5(6):e210187.
George E, Rauschecker AM. Beyond the AJR: Deep Learning Shows Promise in the Detection of Retinal Hemorrhage on Pediatric Head CT. AJR Am J Roentgenol. 2023 Aug 23.
Moawad AW, Janas A, Baid U, Ramakrishnan D, Jekel L, Krantchev K, Moy H, Saluja R, Osenberg K, Wilms K, Kaur M, Avesta A, Pedersen GC, Maleki N, Salimi M, Merkaj S, von Reppert M, Tillmans N, Lost J, Bousabarah K, Holler W, Lin M, Westerhoff M, Maresca R, Link KE, Tahon NH, Marcus D, Sotiras A, LaMontagne P, Chakrabarty S, Teytelboym O, Youssef A, Nada A, Velichko YS, Gennaro N, Connectome Students, Group of Annotators, Cramer J, Johnson DR, Kwan BYM, Petrovic B, Patro SN, Wu L, So T, Thompson G, Kam A, Perez-Carrillo GG, Lall N, Group of Approvers, Albrecht J, Anazodo U, Lingaru MG, Menze BH, Wiestler B, Adewole M, Anwar SM, Labella D, Li HB, Iglesias JE, Farahani K, Eddy J, Bergquist T, Chung V, Shinohara RT, Dako F, Wiggins W, Reitman Z, Wang C, Liu X, Jiang Z, Van Leemput K, Piraud M, Ezhov I, Johanson E, Meier Z, Familiar A, Kazerooni AF, Kofler F, Calabrese E, Aneja S, Chiang V, Ikuta I, Shafique U, Memon F, Conte GM, Bakas S, Rudie J, Aboian M. The Brain Tumor Segmentation (BraTS-METS) Challenge 2023: Brain Metastasis Segmentation on Pre-treatment MRI. ArXiv. 2023 Jun 01.
LaBella D, Adewole M, Alonso-Basanta M, Altes T, Anwar SM, Baid U, Bergquist T, Bhalerao R, Chen S, Chung V, Conte GM, Dako F, Eddy J, Ezhov I, Godfrey D, Hilal F, Familiar A, Farahani K, Iglesias JE, Jiang Z, Johanson E, Kazerooni AF, Kent C, Kirkpatrick J, Kofler F, Leemput KV, Li HB, Liu X, Mahtabfar A, McBurney-Lin S, McLean R, Meier Z, Moawad AW, Mongan J, Nedelec P, Pajot M, Piraud M, Rashid A, Reitman Z, Shinohara RT, Velichko Y, Wang C, Warman P, Wiggins W, Aboian M, Albrecht J, Anazodo U, Bakas S, Flanders A, Janas A, Khanna G, Linguraru MG, Menze B, Nada A, Rauschecker AM, Rudie J, Tahon NH, Villanueva-Meyer J, Wiestler B, Calabrese E. The ASNR-MICCAI Brain Tumor Segmentation (BraTS) Challenge 2023: Intracranial Meningioma. ArXiv. 2023 May 12.
Pham N, Hill V, Rauschecker A, Lui Y, Niogi S, Fillipi CG, Chang P, Zaharchuk G, Wintermark M. Critical Appraisal of Artificial Intelligence-Enabled Imaging Tools Using the Levels of Evidence System. AJNR Am J Neuroradiol. 2023 Apr 20.
Rauschecker AM, Mo SS, Randall M, Shen-Sampas J, Rubenstein JL. Tafasitamab at the blood-brain barrier. Br J Haematol. 2023 Jan 23.
Tran CBN, Nedelec P, Weiss DA, Rudie JD, Kini L, Sugrue LP, Glenn OA, Hess CP, Rauschecker AM. Development of Gestational Age-Based Fetal Brain and Intracranial Volume Reference Norms Using Deep Learning. AJNR Am J Neuroradiol. 2023 Jan; 44(1):82-90.
Calabrese E, Villanueva-Meyer JE, Rudie JD, Rauschecker AM, Baid U, Bakas S, Cha S, Mongan JT, Hess CP. The University of California San Francisco Preoperative Diffuse Glioma MRI Dataset. Radiol Artif Intell. 2022 Nov; 4(6):e220058.
Rudie JD, Calabrese E, Saluja R, Weiss D, Colby JB, Cha S, Hess CP, Rauschecker AM, Sugrue LP, Villanueva-Meyer JE. Longitudinal Assessment of Posttreatment Diffuse Glioma Tissue Volumes with Three-dimensional Convolutional Neural Networks. Radiol Artif Intell. 2022 Sep; 4(5):e210243.
Chen JV, Chaudhari G, Hess CP, Glenn OA, Sugrue LP, Rauschecker AM, Li Y. Deep Learning to Predict Neonatal and Infant Brain Age from Myelination on Brain MRI Scans. Radiology. 2022 Jul 19; 211860.
