BRAIN Lab Publications
Tejani AS, Rauschecker AM. One System to Rule Them All? Task- and Data-specific Considerations for Automated Data Extraction. Radiol Artif Intell. 2025 May; 7(3):e250175.
Weinert DA, Rauschecker AM. Enhancing Large Language Models with Retrieval-Augmented Generation: A Radiology-Specific Approach. Radiol Artif Intell. 2025 May; 7(3):e240313.
Poole S, Sisodia N, Koshal K, Henderson K, Wijangco J, Paredes D, Chen C, Rowles W, Akula A, Wuerfel J, Sharma V, UCSF Multiple Sclerosis and Neuroinflammation Center clinicians, Rauschecker AM, Henry RG, Bove R. Detecting New Lesions Using a Large Language Model: Applications in Real-World Multiple Sclerosis Datasets. Ann Neurol. 2025 Apr 25.
Starkweather CK, Sugrue LP, Nedelec P, Krystal AD, Knowlton RC, Chang EF. Rapid resolution of depression and epilepsy following resection of a septal region tumor: illustrative case. J Neurosurg Case Lessons. 2025 Apr 14; 9(15).
Haddadi Avval A, Banerjee S, Zielke J, Kann B, Mueller S, Rauschecker AM. Applications of Artificial Intelligence and Advanced Imaging in Pediatric Diffuse Midline Glioma. Neuro Oncol. 2025 Mar 03.
Neurocognitive and brain structure correlates of reading and television habits in early adolescence.
Rauschecker AM, Nedelec P, Pan S, Olaru M, Nillo RM, Palmer CE, Pecheva D, Dale AM, Jernigan TL, Sugrue LP. Neurocognitive and brain structure correlates of reading and television habits in early adolescence. Sci Rep. 2025 Feb 20; 15(1):6235.
Eghbali R, Nedelec P, Weiss D, Bhalerao R, Xie L, Rudie JD, Liu C, Sugrue LP, Rauschecker AM. Automated Lesion and Feature Extraction Pipeline for Brain MRIs with Interpretability. Neuroinformatics. 2025 Jan 09; 23(1):2.
Geng H, Mo SS, Chen L, Ballapuram A, Tsang M, Lu M, Rauschecker AM, Wen KW, Devine WP, Solomon DA, Rubenstein JL. Identification of Genomic Biomarkers of Disease Progression and Survival in Primary CNS Lymphoma. Blood Adv. 2024 Nov 13.
Rauschecker AM. Standardizing qualitative assessments of developing myelination on brain MRI. Eur J Paediatr Neurol. 2024 Sep; 52:A1.
Lew CO, Calabrese E, Chen JV, Tang F, Chaudhari G, Lee A, Faro J, Juul S, Mathur A, McKinstry RC, Wisnowski JL, Rauschecker A, Wu YW, Li Y. Artificial Intelligence Outcome Prediction in Neonates with Encephalopathy (AI-OPiNE). Radiol Artif Intell. 2024 Jul 10; e240076.
Fields BKK, Calabrese E, Mongan J, Cha S, Hess CP, Sugrue LP, Chang SM, Luks TL, Villanueva-Meyer JE, Rauschecker AM, Rudie JD. The University of California San Francisco Adult Longitudinal Post-Treatment Diffuse Glioma (UCSF-ALPTDG) MRI Dataset. Radiol Artif Intell. 2024 Jun 12; e230182.
LaBella D, Khanna O, McBurney-Lin S, Mclean R, Nedelec P, Rashid AS, Tahon NH, Altes T, Baid U, Bhalerao R, Dhemesh Y, Floyd S, Godfrey D, Hilal F, Janas A, Kazerooni A, Kent C, Kirkpatrick J, Kofler F, Leu K, Maleki N, Menze B, Pajot M, Reitman ZJ, Rudie JD, Saluja R, Velichko Y, Wang C, Warman PI, Sollmann N, Diffley D, Nandolia KK, Warren DI, Hussain A, Fehringer JP, Bronstein Y, Deptula L, Stein EG, Taherzadeh M, Portela de Oliveira E, Haughey A, Kontzialis M, Saba L, Turner B, Brüßeler MMT, Ansari S, Gkampenis A, Weiss DM, Mansour A, Shawali IH, Yordanov N, Stein JM, Hourani R, Moshebah MY, Abouelatta AM, Rizvi T, Willms K, Martin DC, Okar A, D'Anna G, Taha A, Sharifi Y, Faghani S, Kite D, Pinho M, Haider MA, Alonso-Basanta M, Villanueva-Meyer J, Rauschecker AM, Nada A, Aboian M, Flanders A, Bakas S, Calabrese E. A multi-institutional meningioma MRI dataset for automated multi-sequence image segmentation. Sci Data. 2024 May 15; 11(1):496.
Roy E, Van Rinsveld A, Nedelec P, Richie-Halford A, Rauschecker AM, Sugrue LP, Rokem A, McCandliss BD, Yeatman JD. Differences in educational opportunity predict white matter development. Dev Cogn Neurosci. 2024 Jun; 67:101386.
Chen JV, Li Y, Tang F, Chaudhari G, Lew C, Lee A, Rauschecker AM, Haskell-Mendoza AP, Wu YW, Calabrese E. Automated neonatal nnU-Net brain MRI extractor trained on a large multi-institutional dataset. Sci Rep. 2024 02 26; 14(1):4583.
Rudie JD, Saluja R, Weiss DA, Nedelec P, Calabrese E, Colby JB, Laguna B, Mongan J, Braunstein S, Hess CP, Rauschecker AM, Sugrue LP, Villanueva-Meyer JE. The University of California San Francisco, Brain Metastases Stereotactic Radiosurgery (UCSF-BMSR) MRI Dataset. Radiol Artif Intell. 2024 Feb 21; e230126.
Parekh P, Fan CC, Frei O, Palmer CE, Smith DM, Makowski C, Iversen JR, Pecheva D, Holland D, Loughnan R, Nedelec P, Thompson WK, Hagler DJ, Andreassen OA, Jernigan TL, Nichols TE, Dale AM. FEMA: Fast and efficient mixed-effects algorithm for large sample whole-brain imaging data. Hum Brain Mapp. 2024 Feb 01; 45(2):e26579.
Roy E, Richie-Halford A, Kruper J, Narayan M, Bloom D, Nedelec P, Rauschecker AM, Sugrue LP, Brown TT, Jernigan TL, McCandliss BD, Rokem A, Yeatman JD. White matter and literacy: A dynamic system in flux. Dev Cogn Neurosci. 2024 Jan 06; 65:101341.
Tsui B, Calabrese E, Zaharchuk G, Rauschecker AM. Reducing Gadolinium Contrast With Artificial Intelligence. J Magn Reson Imaging. 2023 Oct 31.
Wahlig SG, Nedelec P, Weiss DA, Rudie JD, Sugrue LP, Rauschecker AM. 3D U-Net for automated detection of multiple sclerosis lesions: utility of transfer learning from other pathologies. Front Neurosci. 2023; 17:1188336.
Ma SX, Dhanaliwala AH, Rudie JD, Rauschecker AM, Roberts-Wolfe D, Haddawy P, Kahn CE. Bayesian Networks in Radiology. Radiol Artif Intell. 2023 Nov; 5(6):e210187.
