Atlas Haddadi Avval, MD

Postdoctoral Scholar

https://profiles.ucsf.edu/atlas.haddadiavval

Atlas is a Postdoctoral Scholar in the lab, focusing on the applications of deep learning and advanced MRI techniques in Diffuse Midline Glioma, a rare pediatric tumor. She completed her M.D. degree from Mashhad University of Medical Sciences (MUMS) in Iran and previously worked on cancer radiomics and radiogenomics combined with machine learning. In her free time, she enjoys going on a run or hike with friends, dancing, and playing the piano

Publications

Improved Deep Learning Segmentation of Pediatric Diffuse Midline Gliomas After Treatment.

AJNR. American journal of neuroradiology

Zielke J, Mussa FR, Zapaishchykova A, Tak D, Haddadi Avval A, Mojahed-Yazdi R, Ye Z, Rameh V, Ramegowda R, Schneider AG, Hanafy A, Alves C, Vajapeyam S, Mueller S, Haas-Kogan DA, Aerts HJWL, Rauschecker AM, Linguraru MG, Poussaint TY, Arnaout O, Kann BH

Artificial Intelligence Applications in Musculoskeletal Imaging.

Current reviews in musculoskeletal medicine

Shariatnia MM, Bagherieh S, Semnani F, Rafiei N, Avval AH, Ollivier M, Musahl V, Pareek A

Applications of Artificial Intelligence and Advanced Imaging in Pediatric Diffuse Midline Glioma.

Neuro-oncology

Haddadi Avval A, Banerjee S, Zielke J, Kann B, Mueller S, Rauschecker AM

Best Practices and Checklist for Reviewing Artificial Intelligence-Based Medical Imaging Papers: Classification.

Journal of imaging informatics in medicine

Kline TL, Kitamura F, Warren D, Pan I, Korchi AM, Tenenholtz N, Moy L, Gichoya JW, Santos I, Moradi K, Avval AH, Alkhulaifat D, Blumer SL, Hwang MY, Git KA, Shroff A, Stember J, Walach E, Shih G, Langer SG

Medical Image Segmentation Review: The Success of U-Net.

IEEE transactions on pattern analysis and machine intelligence

Azad R, Aghdam EK, Rauland A, Jia Y, Avval AH, Bozorgpour A, Karimijafarbigloo S, Cohen JP, Adeli E, Merhof D

The effect of harmonization on the variability of PET radiomic features extracted using various segmentation methods.

Annals of nuclear medicine

Hosseini SA, Shiri I, Ghaffarian P, Hajianfar G, Avval AH, Seyfi M, Servaes S, Rosa-Neto P, Zaidi H, Ay MR

Differential privacy preserved federated learning for prognostic modeling in COVID-19 patients using large multi-institutional chest CT dataset.

Medical physics

Shiri I, Salimi Y, Sirjani N, Razeghi B, Bagherieh S, Pakbin M, Mansouri Z, Hajianfar G, Avval AH, Askari D, Ghasemian M, Sandoughdaran S, Sohrabi A, Sadati E, Livani S, Iranpour P, Kolahi S, Khosravi B, Bijari S, Sayfollahi S, Atashzar MR, Hasanian M, Shahhamzeh A, Teimouri A, Goharpey N, Shirzad-Aski H, Karimi J, Radmard AR, Rezaei-Kalantari K, Oghli MG, Oveisi M, Vafaei Sadr A, Voloshynovskiy S, Zaidi H

Machine learning based readmission and mortality prediction in heart failure patients.

Scientific reports

Sabouri M, Rajabi AB, Hajianfar G, Gharibi O, Mohebi M, Avval AH, Naderi N, Shiri I

Time-to-event overall survival prediction in glioblastoma multiforme patients using magnetic resonance imaging radiomics.

La Radiologia medica

Hajianfar G, Haddadi Avval A, Hosseini SA, Nazari M, Oveisi M, Shiri I, Zaidi H

High-dimensional multinomial multiclass severity scoring of COVID-19 pneumonia using CT radiomics features and machine learning algorithms.

Scientific reports

Shiri I, Mostafaei S, Haddadi Avval A, Salimi Y, Sanaat A, Akhavanallaf A, Arabi H, Rahmim A, Zaidi H

Myocardial Function Prediction After Coronary Artery Bypass Grafting Using MRI Radiomic Features and Machine Learning Algorithms.

Journal of digital imaging

Arian F, Amini M, Mostafaei S, Rezaei Kalantari K, Haddadi Avval A, Shahbazi Z, Kasani K, Bitarafan Rajabi A, Chatterjee S, Oveisi M, Shiri I, Zaidi H

COVID-19 prognostic modeling using CT radiomic features and machine learning algorithms: Analysis of a multi-institutional dataset of 14,339 patients.

Computers in biology and medicine

Shiri I, Salimi Y, Pakbin M, Hajianfar G, Avval AH, Sanaat A, Mostafaei S, Akhavanallaf A, Saberi A, Mansouri Z, Askari D, Ghasemian M, Sharifipour E, Sandoughdaran S, Sohrabi A, Sadati E, Livani S, Iranpour P, Kolahi S, Khateri M, Bijari S, Atashzar MR, Shayesteh SP, Khosravi B, Babaei MR, Jenabi E, Hasanian M, Shahhamzeh A, Foroghi Ghomi SY, Mozafari A, Teimouri A, Movaseghi F, Ahmari A, Goharpey N, Bozorgmehr R, Shirzad-Aski H, Mortazavi R, Karimi J, Mortazavi N, Besharat S, Afsharpad M, Abdollahi H, Geramifar P, Radmard AR, Arabi H, Rezaei-Kalantari K, Oveisi M, Rahmim A, Zaidi H

Impact of feature harmonization on radiogenomics analysis: Prediction of EGFR and KRAS mutations from non-small cell lung cancer PET/CT images.

Computers in biology and medicine

Shiri I, Amini M, Nazari M, Hajianfar G, Haddadi Avval A, Abdollahi H, Oveisi M, Arabi H, Rahmim A, Zaidi H

Overall Survival Prediction in Renal Cell Carcinoma Patients Using Computed Tomography Radiomic and Clinical Information.

Journal of digital imaging

Khodabakhshi Z, Amini M, Mostafaei S, Haddadi Avval A, Nazari M, Oveisi M, Shiri I, Zaidi H